cas-ESM 安装教程
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cas-ESM 安装教程
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目錄
前言
一、準備環境和代碼
1.拷貝代碼
二、機器相關的腳本文件配置
1.復制配置文件并命名
2.修改配置文件
（1）Macros.huanmy_intel?
（2）config_machine.xml
三、創建case和編譯
1.創建case
2.編譯case
四、運行case
1.編寫作業腳本
2.拷貝陸面模式初始場和強迫場
（1）mkdir timing
（2）陸面資料
?（3）修改一些in的 參數
3.提交和查看作業腳本
前言
之前一只在發展和運行cesm ，而我的主要博士任務是發展cas-esm，之前一直是受困于沒有代碼和運行方法。
今天我終于和所里的發展cas-esm 動力框架的老師聯系，給了我代碼和運行的方法。
下面將要進行cas-esm 的移植和運行：
?
一、準備環境和代碼
1.拷貝代碼
因為都是在密云的大科學裝置上的，所以只需要將代碼考到我的目錄里就可以。
只需要用到cp命令
cp -r xxx /data/name/cas-esm/其中xxx是cas-esm的代碼路徑
2.加載環境
?.bashrc
# .bashrc# Source global definitions if [ -f /etc/bashrc ]; then. /etc/bashrc fi# Uncomment the following line if you don't like systemctl's auto-paging feature: # export SYSTEMD_PAGER=# User specific aliases and functions alias tl='tail -f' alias yhq='squeue' alias yhi='sinfo' alias yc='scancel' #alias ls='ls -lh --time-style="+%Y-%m-%d %H:%I:%S"'module purge #module use ~/.module #intelmpi2018 module load compiler/intel/2017.5.239 module load mathlib/netcdf/intel/4.4.1 #czy module load apps/ncl_ncarg/6.3.0 module load apps/ncl_ncarg/6.6.2 module load apps/nco/intel/4.8.1 module load apps/anaconda3/5.3.0 module load mathlib/cdo/intel/1.10.19 module load mathlib/hdf5/intel/1.8.20 module load mathlib/jasper/intel/1.900.1 module load mathlib/jpeg/intel/9a module load mathlib/libpng/intel/1.2.12 module load mathlib/pnetcdf/intel/1.12.1 module load mathlib/szip/intel/2.1.1 module load mathlib/udunits/intel/2.2.28 module load mpi/intelmpi/2017.4.239 #module load mpi/intelmpi/2018.4.274 module load mathlib/zlib/intel/1.2.11 export PATH=/public/home/zhangh/soft/jdk-16.0.1/bin:$PATH alias panoply=/public/home/zhangh/soft/PanoplyJ/panoply.sh . /public/software/apps/anaconda3/5.3.0/etc/profile.d/conda.sh export ncview=/public/software/apps/ncview-2.1.7 export PATH=/public/software/apps/ncview-2.1.7/intel/bin:$PATH二、機器相關的腳本文件配置
1.復制配置文件并命名
代碼如下（示例）：
cd $CAS-ESM_HOME/scripts/ccsm_utils/Machines
ls? *linux_intel
env_machopts.generic_linux_intel? mkbatch.generic_linux_intel
Macros.generic_linux_intel
cp env_machopts.generic_linux_intel??? env_machopts.def_intel
cp mkbatch.generic_linux_intel????? mkbatch.def_intel
cp Macros.huanty_czy???? Macros.def_intel
其中def 可以自己取名字
cp env_machopts.generic_linux_intel??? env_machopts.huanmy_intelcp mkbatch.generic_linux_intel????? mkbatch.huanmy_intelcp Macros.huanty_czy???? Macros.huanmy_intells? *huanmy_intel
env_machopts.huanmy_intel? mkbatch.huanmy_intel
Macros.huanmy_intel
2.修改配置文件
env_machopts.huanmy_intel
這個腳本是用來設定所使用的機器是否支持MPISERIAL，如果支持，則該腳本無需修改，否則需要修改。
mkbatch.huanmy_intel
這個腳本是用來自動生成提交作業的腳本文件，根據作業系統的不同，編寫內容也不同。如果你決定在生成可執行文件后，手動編寫作業腳本文件，則該腳本可不做修改。
Macros.huanmy_intel
最重要的腳本，用來設定Fortran, C, NetCDF以及MPI的路徑，由于在同一個機子上移植所以我這里也不需要修改
NETCDF_PATH?? := /public/software/mathlib/netcdf/intel/4.1.3
MPICH_PATH := /public/software/mpi/intelmpi/2017.4.239/intel64
但是我檢查我load的module在這里
?which ncdump?
/public/software/mathlib/libs-intel/netcdf/4.4.1/bin/ncdump
config_machines.xml
這里和之前的cesm的配置就相像了
<machine MACH=“huanmy_intel"
?????????????????? DESC="afw 64pes/node"
????????????????? EXEROOT="$CAS-ESM_HOME/$CASE"
????????????????? OBJROOT="$EXEROOT"
????????????????? INCROOT="$EXEROOT/lib/include"
????????????????? DIN_LOC_ROOT_CSMDATA="/data/zhangh/public/inputdata"
????????????????? DOUT_S_ROOT="$ CAS-ESM_HOME /$CASE"
????????????????? DOUT_L_HTAR="FALSE"
????????????????? DOUT_L_MSROOT="csm/$CASE“
?? ? OS="Linux"
????????????????? GMAKE_J="2"
????????????????? MAX_TASKS_PER_NODE=“40"
????????????????? MPISERIAL_SUPPORT="TRUE" />
紅色字是需要重點關注的，其中數據文件夾用了老師的，cas-esm的文件下載有點不一樣，自己不好弄
config_pes.xml
添加適合機器配置cpu個數信息
<pes mach_match="afw" >
? ? <NTASKS_ATM>128</NTASKS_ATM> <NTHRDS_ATM>1</NTHRDS_ATM> <ROOTPE_ATM>0</ROOTPE_ATM>
? ? <NTASKS_LND>128</NTASKS_LND> <NTHRDS_LND>1</NTHRDS_LND> <ROOTPE_LND>0</ROOTPE_LND>
? ? <NTASKS_ICE>120</NTASKS_ICE> <NTHRDS_ICE>1</NTHRDS_ICE> <ROOTPE_ICE>0</ROOTPE_ICE>
? ? <NTASKS_OCN>120</NTASKS_OCN> <NTHRDS_OCN>1</NTHRDS_OCN> <ROOTPE_OCN>0</ROOTPE_OCN>
? ? <NTASKS_CPL>128</NTASKS_CPL> <NTHRDS_CPL>1</NTHRDS_CPL> <ROOTPE_CPL>0</ROOTPE_CPL>
? ? <NTASKS_GLC>128</NTASKS_GLC> <NTHRDS_GLC>1</NTHRDS_GLC> <ROOTPE_GLC>0</ROOTPE_GLC>
? ? <PES_LEVEL>1m</PES_LEVEL>
</pes>
?相關的三個文件放在這里
（1）Macros.huanmy_intel?
#=============================================================================== # SVN $Id: Macros.cppdefs 28555 2011-05-20 16:56:22Z fischer $ # SVN $URL: https://svn-ccsm-models.cgd.ucar.edu/scripts/branch_tags/cesm1_0_rel_tags/cesm1_0_3_n02_scripts4_110531b/ccsm_utils/Machines/Macros.cppdefs $ #=============================================================================== # set CPP options (must use this before any flags or cflags settings) # Scripts build: this file is prepended to the $CASEROOT/Macros.machine file # by create_newcase # Cam build: this file is prepended to the $cam_bld/Macros file # by cam's configure #===============================================================================CPPDEFS := $(USER_CPPDEFS)# USE_ESMF_LIB is currently only defined in env_build.xml ifeq ($(USE_ESMF_LIB), TRUE)CPPDEFS += -DUSE_ESMF_LIB endif# ESMF_INTERFACE is currently only defined in env_build.xml ifeq ($(COMP_INTERFACE), ESMF)CPPDEFS += -DESMF_INTERFACE elseCPPDEFS += -DMCT_INTERFACE endif# USE_MPISERIAL is currently only defined in env_conf.xml ifeq ($(USE_MPISERIAL),TRUE)# defaultCPPDEFS += -DNO_MPI2 elseCPPDEFS += -DHAVE_MPI endif# CCSM_BGC is currently only defined in env_conf.xml ifneq ($(CCSM_BGC),)ifneq ($(CCSM_BGC),none)CPPDEFS += -D$(CCSM_BGC)endif endif# CCSM_VOC is currently only defined in env_conf.xml ifeq ($(CCSM_VOC), TRUE)CPPDEFS += -DVOC endif# GLC_NEC is defined in env_conf.xml ifneq ($(GLC_NEC),0)CPPDEFS += -DGLC_NEC_$(GLC_NEC) endif# Whether WRF is open or not ifeq ($(strip $(COMP_WRF)),wrf)CPPDEFS += -DWRF endif # Set config args for pio and mct to blank and then enable serial # if USE_MPISERIAL (in env_conf) is set CONFIG_ARGS := ifeq ($(USE_MPISERIAL),TRUE)CONFIG_ARGS= --enable-mpiserial endif ifeq ($(MODEL),pio)ifeq ($DEBUG,TRUE)CONFIG_ARGS+= --enable-debugendif endif#=============================================================================== # The following always need to be set # SPMD Whether to build in SPMD mode or not. [values TRUE FALSE] # SMP Set to TRUE to enable building in SMP mode (uses OpenMP). # USER_CPPDEFS CPP definitions (non platform dependent) # #===============================================================================# Note that CPPDEFS is set in Macros.cppdefs CPPDEFS += -DLINUX -DSEQ_$(FRAMEWORK) -DFORTRANUNDERSCORE -DNO_R16 -DNO_SHR_VMATH ifeq ($(compile_threaded), true)CPPDEFS += -DTHREADED_OMP endififeq ($(USE_MPISERIAL),TRUE)FC := ifort CC := mpiicc else # FC := mpif90FC := mpiifort # CC := mpiccCC := mpiicc endif#===================================================== # GENERIC_USER # The netcdf and mpi paths need to be set somewhere. In CESM, this # is normally done by setting the NETCDF_PATH and MPICH_PATH # variables in this Macros file. But they could also be set in the # default user paths, by an explicit addition to the local path # in the env_mach_specific file, or via setting NETCDF_PATH # and MPICH_PATH environment variables in the env_mach_specific file. # Also, review the relative paths of the INC_, LIB_, and MOD_ paths # below. Ignore PNETCDF stuff initially, it's not required.ifeq ($(strip $(NETCDF_PATH)),)NETCDF_PATH := /public/software/mathlib/libs-intel/netcdf/4.4.1 endif INC_NETCDF := $(NETCDF_PATH)/include LIB_NETCDF := $(NETCDF_PATH)/lib -lnetcdff -lnetcdf MOD_NETCDF := $(NETCDF_PATH)/include ifeq ($(strip $(MPICH_PATH)),) MPICH_PATH := /public/software/mpi/intelmpi/2017.4.239/intel64 endif ifeq ($(USE_MPISERIAL),TRUE)INC_MPI := $(CODEROOT)/utils/mct/mpi-serialLIB_MPI := elseLIB_MPI := $(MPICH_PATH)/libINC_MPI := $(MPICH_PATH)/include endif MPI_LIB_NAME := mpi PNETCDF_PATH := INC_PNETCDF := LIB_PNETCDF := LAPACK_LIBDIR := #=====================================================CFLAGS := $(CPPDEFS) -m64 FIXEDFLAGS := -132 FREEFLAGS := -FR #FFLAGS := $(CPPDEFS) -no-prec-div -traceback -convert big_endian -fp-model source -assume byterecl -ftz -traceback -m64 -shared-intel -mcmodel=large -safe-cray-ptr FFLAGS := $(CPPDEFS) -no-prec-div -traceback -convert big_endian -fp-model source -assume byterecl -ftz -m64 -mcmodel=large -safe-cray-ptr FFLAGS_NOOPT := $(FFLAGS) -O0 FFLAGS_OPT := -O1 LDFLAGS := -m64 -static-intel AR := ar MOD_SUFFIX := mod CONFIG_SHELL :=#=============================================================================== # Set include paths (needed after override for any model specific builds below) #===============================================================================INCLDIR := -I. ifneq ($(strip $(INC_NETCDF)),) INCLDIR += -I$(INC_NETCDF) endif ifneq ($(strip $(MOD_NETCDF)),) INCLDIR += -I$(MOD_NETCDF) endif ifneq ($(strip $(INC_MPI)),) INCLDIR += -I$(INC_MPI) endif ifneq ($(strip $(INC_PNETCDF)),) INCLDIR += -I$(INC_PNETCDF) endif#=============================================================================== # Set model and other specific options # NOTE - all CPPDEFS options must be defined before this point #=============================================================================== ifeq ($(strip $(MODEL)),pop2) FFLAGS := $(CPPDEFS) -O1 -r8 -i4 -g -convert big_endian -assume byterecl -fp-model precise -fp-speculation=safe -no-vec -traceback endif ifeq ($(strip $(MODEL)),licom) FFLAGS := $(CPPDEFS) -O1 -r8 -i4 -g -convert big_endian -assume byterecl -DLICOM -fp-model precise -fp-speculation=safe -no-vec -traceback endififeq ($(DEBUG),TRUE)FFLAGS += -CU -check pointers -fpe0 -ftzFFLAGS_NOOPT += -CU -check pointers -fpe0 -ftz elseFFLAGS += $(FFLAGS_OPT) endififeq ($(compile_threaded), true)FFLAGS += -openmpFFLAGS_NOOPT += -openmpCFLAGS += -openmpLDFLAGS += -openmp endififeq ($(strip $(MODEL)),cam) # These RRTMG files cause a compiler error when using optimization. # Until mods are made to read the data from files, just remove optimization from # their compilation. rrtmg_lw_k_g.o: rrtmg_lw_k_g.f90$(FC) -c $(CPPDEFS) $(INCLDIR) $(INCS) $(FREEFLAGS) $(FFLAGS_NOOPT) $< rrtmg_sw_k_g.o: rrtmg_sw_k_g.f90$(FC) -c $(CPPDEFS) $(INCLDIR) $(INCS) $(FREEFLAGS) $(FFLAGS_NOOPT) $< endif#===================================================== # GENERIC_USER # Options passed to the mct and pio build are set hereifeq ($(MODEL),mct)#add arguments for mct configure hereCONFIG_ARGS += CC="$(CC)" FC="$(FC)" F90="$(FC)" INCLUDEPATH="-I$(INC_MPI)" endififeq ($(MODEL),pio)ifneq ($(strip $(PIO_CONFIG_OPTS)),)CONFIG_ARGS += $(PIO_CONFIG_OPTS)endif CONFIG_ARGS += MPIF90="mpiifort" CC="$(CC)" F90="$(FC)" NETCDF_PATH="$(NETCDF_PATH)" MPI_INC="-I$(INC_MPI)" endif #=====================================================（2）config_machine.xml
<?xml version="1.0"?><config_machines> <machine MACH="cheyenne"DESC="NCAR cheyenne"EXEROOT="/gpfs/fs1/scratch/mzhang/output/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/gpfs/fs1/scratch/mzhang/inputdata"DIN_LOC_ROOT_CLMQIAN="/gpfs/fs1/scratch/mzhang/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/gpfs/fs1/scratch/mzhang/output/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT=""OS="Linux"GMAKE_J="2"MAX_TASKS_PER_NODE="36"MPISERIAL_SUPPORT="TRUE" /><machine MACH="storm"DESC="storm (intel), 32 pes/node, no batch system"EXEROOT="/T1/mzhang/minghua2/CAS-ESM/output/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/R0/jhe/inputdata"DIN_LOC_ROOT_CLMQIAN="/R0/jhe/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/T1/mzhang/minghua2/CAS-ESM/output/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT=""OS="Linux"GMAKE_J="2"MAX_TASKS_PER_NODE="32"MPISERIAL_SUPPORT="TRUE" /><machine MACH="bluefire"DESC="NCAR IBM p6, os is AIX, 32 pes/node, batch system is LSF" EXEROOT="/ptmp/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/fis/cgd/cseg/csm/inputdata"DIN_LOC_ROOT_CLMQIAN="/cgd/tss/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/ptmp/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/fis/cgd/cseg/csm/ccsm_baselines"CCSM_CPRNC="/fis/cgd/cseg/csm/tools/cprnc/cprnc"ESMF_LIBDIR="/ptmp/svasquez/esmf_install/ESMF_5_2_0-O/lib/"OS="AIX" BATCHQUERY="bjobs -w"BATCHSUBMIT="bsub <" GMAKE_J="32" MAX_TASKS_PER_NODE="64"MPISERIAL_SUPPORT="TRUE"PES_PER_NODE="32" /><machine MACH="brutus_po"DESC="Brutus Linux Cluster ETH (pgi/9.0-1 with open_mpi/1.4.1), 16 pes/node, batch system LSF, added by UB"EXEROOT="/cluster/work/uwis/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/cluster/work/uwis/ccsm/inputdata"DIN_LOC_ROOT_CLMQIAN="/cluster/work/uwis/ccsm/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/cluster/work/uwis/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="/`echo $CCSMUSER | tr '[a-z]' '[A-Z]'`/csm/$CASE"CCSM_BASELINE="/cluster/work/uwis/ccsm/ccsm_baselines"CCSM_CPRNC="/cluster/work/uwis/ccsm/tools/cprnc/cprnc"OS="Linux.pgi"BATCHQUERY="bjobs -w"BATCHSUBMIT="bsub <"GMAKE_J="1"MPISERIAL_SUPPORT="FALSE"MAX_TASKS_PER_NODE="16" /><machine MACH="brutus_pm"DESC="Brutus Linux Cluster ETH (pgi/9.0-1 with mvapich2/1.4rc2), 16 pes/node, batch system LSF, added by UB"EXEROOT="/cluster/work/uwis/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/cluster/work/uwis/ccsm/inputdata"DIN_LOC_ROOT_CLMQIAN="/cluster/work/uwis/ccsm/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/cluster/work/uwis/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="/`echo $CCSMUSER | tr '[a-z]' '[A-Z]'`/csm/$CASE"CCSM_BASELINE="/cluster/work/uwis/ccsm/ccsm_baselines"CCSM_CPRNC="/cluster/work/uwis/ccsm/tools/cprnc/cprnc"OS="Linux.pgi"BATCHQUERY="bjobs -w"BATCHSUBMIT="bsub <"GMAKE_J="1"MPISERIAL_SUPPORT="FALSE"MAX_TASKS_PER_NODE="16" /><machine MACH="brutus_io"DESC="Brutus Linux Cluster ETH (intel/10.1.018 with open_mpi/1.4.1), 16 pes/node, batch system LSF, added by UB"EXEROOT="/cluster/work/uwis/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/cluster/work/uwis/ccsm/inputdata"DIN_LOC_ROOT_CLMQIAN="/cluster/work/uwis/ccsm/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/cluster/work/uwis/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="/`echo $CCSMUSER | tr '[a-z]' '[A-Z]'`/csm/$CASE"CCSM_BASELINE="/cluster/work/uwis/ccsm/ccsm_baselines"CCSM_CPRNC="/cluster/work/uwis/ccsm/tools/cprnc/cprnc"OS="Linux.intel"BATCHQUERY="bjobs -w"BATCHSUBMIT="bsub <"GMAKE_J="1"MPISERIAL_SUPPORT="FALSE"MAX_TASKS_PER_NODE="16" /><machine MACH="brutus_im"DESC="Brutus Linux Cluster ETH (intel/10.1.018 with mvapich2/1.4rc2), 16 pes/node, batch system LSF, added by UB"EXEROOT="/cluster/work/uwis/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/cluster/work/uwis/ccsm/inputdata"DIN_LOC_ROOT_CLMQIAN="/cluster/work/uwis/ccsm/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/cluster/work/uwis/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="/`echo $CCSMUSER | tr '[a-z]' '[A-Z]'`/csm/$CASE"CCSM_BASELINE="/cluster/work/uwis/ccsm/ccsm_baselines"CCSM_CPRNC="/cluster/work/uwis/ccsm/tools/cprnc/cprnc"OS="Linux.intel"BATCHQUERY="bjobs -w"BATCHSUBMIT="bsub <"GMAKE_J="1"MPISERIAL_SUPPORT="FALSE"MAX_TASKS_PER_NODE="16" /><machine MACH="edinburgh_lahey"DESC="NCAR CGD Linux Cluster (lahey), 8 pes/node, batch system is PBS"EXEROOT="/scratch/cluster/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/fs/cgd/csm/inputdata"DIN_LOC_ROOT_CLMQIAN="/project/tss/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/scratch/cluster/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/fs/cgd/csm/ccsm_baselines"CCSM_CPRNC="/fs/cgd/csm/tools/cprnc_64/cprnc"OS="Linux"BATCHQUERY="/usr/local/torque/bin/qstat"BATCHSUBMIT="/usr/local/torque/bin/qsub" GMAKE_J="1" MAX_TASKS_PER_NODE="16"MPISERIAL_SUPPORT="TRUE" /><machine MACH="edinburgh_pgi"DESC="NCAR CGD Linux Cluster (pgi), 8 pes/node, batch system is PBS"EXEROOT="/scratch/cluster/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/fs/cgd/csm/inputdata"DIN_LOC_ROOT_CLMQIAN="/project/tss/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/scratch/cluster/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/fs/cgd/csm/ccsm_baselines"CCSM_CPRNC="/fs/cgd/csm/tools/cprnc_64/cprnc"OS="Linux.pgi"BATCHQUERY="/usr/local/torque/bin/qstat"BATCHSUBMIT="/usr/local/torque/bin/qsub" GMAKE_J="1" MAX_TASKS_PER_NODE="8"MPISERIAL_SUPPORT="TRUE" /><machine MACH="edinburgh_intel"DESC="NCAR CGD Linux Cluster (intel), 8 pes/node, batch system is PBS"EXEROOT="/scratch/cluster/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/fs/cgd/csm/inputdata"DIN_LOC_ROOT_CLMQIAN="/project/tss/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/scratch/cluster/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/fs/cgd/csm/ccsm_baselines"CCSM_CPRNC="/fs/cgd/csm/tools/cprnc_64/cprnc"OS="Linux"BATCHQUERY="/usr/local/torque/bin/qstat"BATCHSUBMIT="/usr/local/torque/bin/qsub" GMAKE_J="1" MAX_TASKS_PER_NODE="8"MPISERIAL_SUPPORT="TRUE" /><machine MACH="cloud_intel"DESC="SoMAS Linux Cluster (intel), 32 pes/node, no batch system"EXEROOT="$HOME/CAS-ESM/test/cas-esm1_0_3/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="$HOME/cesm_input"DOUT_S_ROOT="$HOME/CAS-ESM/test/cas-esm1_0_3/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux"GMAKE_J="4" MAX_TASKS_PER_NODE="32"MPISERIAL_SUPPORT="TRUE" /><machine MACH="icces_intel"DESC="ICCES Linux Cluster (intel), 8 pes/node, no batch system"EXEROOT="$HOME/cesm-IAP_2Dpar/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/disk5/data/cesm-input"DOUT_S_ROOT="$HOME/cesm-IAP_2Dpar/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux"GMAKE_J="1" MAX_TASKS_PER_NODE="8"MPISERIAL_SUPPORT="FALSE" /><machine MACH="tianhe_intel"DESC="TIAN HE 1A (intel), 12 pes/node, no batch system"EXEROOT="/home/scwangty/wangty/CAS_ESM_wty/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/work1/jjr/wangyz/data/inputdata"DOUT_S_ROOT="/home/scwangty/wangty/CAS_ESM_wty/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux"GMAKE_J="2" MAX_TASKS_PER_NODE="12"MPISERIAL_SUPPORT="TRUE" /><machine MACH="era_czy"DESC="YUAN (intel), 24 pes/node, no batch system"EXEROOT="/home/zmh_czy/scratch_casesm/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/home/zmh_czy/data/inputdata"DOUT_S_ROOT="/home/zmh_czy/scratch_casesm/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux.intel"GMAKE_J="20"MAX_TASKS_PER_NODE="24"MPISERIAL_SUPPORT="TRUE"PES_PER_NODE="24" /><machine MACH="yuan_intel"DESC="YUAN (intel), 10 pes/node, no batch system"EXEROOT="/home/xdzeng/work/github/output/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/work1/jjr/wangyz/data/inputdata"DIN_LOC_ROOT_CLMQIAN="/work1/jjr/wangyz/data/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DIN_LOC_ROOT_CRUNCEP="/work1/jjr/wangyz/data/inputdata/atm/datm7/atm_forcing.datm7.cruncep_qianFill.0.5d.v7.c160715"DOUT_S_ROOT="/home/xdzeng/work/github/output/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux"GMAKE_J="2" MAX_TASKS_PER_NODE="10"MPISERIAL_SUPPORT="TRUE" /><machine MACH="shuguang_intel"DESC="Shu Guang (intel), 24 pes/node, no batch system"EXEROOT="/public/home/hjx/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/public/work/iap/inputdata"DOUT_S_ROOT="/public/home/hjx/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux"GMAKE_J="2"MAX_TASKS_PER_NODE="24"MPISERIAL_SUPPORT="TRUE" /><machine MACH="sugon_czy"DESC="Shu Guang (intel), 24 pes/node, no batch system"EXEROOT="/public/home/chzhy1/scratch_casesm/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/public/home/chzhy1/dat/inputdata"DOUT_S_ROOT="/public/home/chzhy1/scratch_casesm/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux.intel"GMAKE_J="16"MAX_TASKS_PER_NODE="24"MPISERIAL_SUPPORT="TRUE"PES_PER_NODE="24" /><machine MACH="huanty_czy"DESC="Huan_Taiyuan (intel), 64 pes/node, PBS batch system"EXEROOT="/data/zhanghe/czy/scratch_casesm/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/data/zhanghe/inputdata"DOUT_S_ROOT="/data/zhanghe/czy/scratch_casesm/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux"GMAKE_J="16"MAX_TASKS_PER_NODE="64"MPISERIAL_SUPPORT="TRUE"PES_PER_NODE="64" /><machine MACH="huanty_intel_xjb"DESC="Huan_Taiyuan (intel), 64 pes/node, PBS batch system"EXEROOT="/data/zhanghe/xjb/model-IAP-WRF/CASE/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/data/bixq/inputdata"DOUT_S_ROOT="/data/zhanghe/xjb/model-IAP-WRF/CASE/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux"GMAKE_J="2"MAX_TASKS_PER_NODE="64"MPISERIAL_SUPPORT="TRUE" /><machine MACH="huanmy_intel"DESC="Huan_Miyun (intel), 64 pes/node, PBS batch system"EXEROOT="/data/zhangh/CAS-ESM_0d6798/cas-esm/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/data/zhangh/data/inputdata"DOUT_S_ROOT="/data/zhangh/CAS-ESM_0d6798/cas-esm/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux"GMAKE_J="2"MAX_TASKS_PER_NODE="64"MPISERIAL_SUPPORT="TRUE" /><machine MACH="iapshug_intel"DESC="Shu Guang (intel), 24 pes/node, batch system is PBS"EXEROOT="$HOME/CAS-ESM-dev/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/5600/inputdata"DOUT_S_ROOT="$HOME/CAS-ESM-dev/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux"GMAKE_J="2"MAX_TASKS_PER_NODE="24"MPISERIAL_SUPPORT="TRUE" /><machine MACH="franklin"DESC="NERSC XT4, os is CNL, 4 pes/node, batch system is PBS"EXEROOT="/scratch/scratchdirs/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/project/projectdirs/ccsm1/inputdata"DIN_LOC_ROOT_CLMQIAN="/project/projectdirs/ccsm1/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/scratch/scratchdirs/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/project/projectdirs/ccsm1/ccsm_baselines"CCSM_CPRNC="/project/projectdirs/ccsm1/tools/cprnc/cprnc"OS="CNL"BATCHQUERY="qstat -f"BATCHSUBMIT="qsub" GMAKE_J="4" MAX_TASKS_PER_NODE="4"MPISERIAL_SUPPORT="FALSE" /><machine MACH="hadley"DESC="UCB Linux Cluster, os is Linux (ia64), batch system is PBS"EXEROOT="/clusterfs/hadley/scratch/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/clusterfs/hadley/ccsmdata/inputdata"DIN_LOC_ROOT_CLMQIAN="/clusterfs/hadley/ccsmdata/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/clusterfs/hadley/scratch/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="/`echo $CCSMUSER | tr '[a-z]' '[A-Z]'`/csm/$CASE"CCSM_BASELINE="/clusterfs/hadley/ccsmdata/ccsm_baselines"CCSM_CPRNC="/clusterfs/hadley/ccsmdata/tools/cprnc/cprnc"OS="Linux.ia64" BATCHQUERY="qstat"BATCHSUBMIT="qsub " GMAKE_J="8" MAX_TASKS_PER_NODE="8"MPISERIAL_SUPPORT="FALSE" /><machine MACH="hector"DESC="UK National Supercomuting Servies: Hector Cray XE6, batch system is PBS, user-defined"EXEROOT="/work/n02/n02/elfengwh/CESM1.0/CASE_RUN/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/work/n02/n02/elfengwh/CESM1.0/waccm4_input"DIN_LOC_ROOT_CLMQIAN="/work/n02/n02/elfengwh/CESM1.0/waccm4_input/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/work/n02/n02/elfengwh/CESM1.0/output/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/work/n02/n02/elfengwh/CESM1.0/ccsm_baselines"CCSM_CPRNC="/work/n02/n02/elfengwh/CESM1.0/cesm1_0_2/models/atm/cam/tools"OS="UNIX"BATCHQUERY="qstat"BATCHSUBMIT="qsub"GMAKE_J="32"MAX_TASKS_PER_NODE="24"MPISERIAL_SUPPORT="TRUE" /><machine MACH="hopper"DESC="INVALID: hopper is no longer valid, please use hopp2"EXEROOT="/scratch/scratchdirs/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/project/projectdirs/ccsm1/inputdata"DIN_LOC_ROOT_CLMQIAN="/project/projectdirs/ccsm1/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/scratch/scratchdirs/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/project/projectdirs/ccsm1/ccsm_baselines"CCSM_CPRNC="/project/projectdirs/ccsm1/tools/cprnc/cprnc"OS="CNL"BATCHQUERY="qstat -f"BATCHSUBMIT="qsub" GMAKE_J="4" MAX_TASKS_PER_NODE="8"MPISERIAL_SUPPORT="FALSE" /><machine MACH="hopp2"DESC="NERSC XE6, os is CNL, 24 pes/node, batch system is PBS"EXEROOT="/scratch/scratchdirs/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/project/projectdirs/ccsm1/inputdata"DIN_LOC_ROOT_CLMQIAN="/project/projectdirs/ccsm1/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/scratch/scratchdirs/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/project/projectdirs/ccsm1/ccsm_baselines"CCSM_CPRNC="/project/projectdirs/ccsm1/tools/cprnc/cprnc"OS="CNL"BATCHQUERY="qstat -f"BATCHSUBMIT="qsub" GMAKE_J="4" MAX_TASKS_PER_NODE="24"MPISERIAL_SUPPORT="FALSE" /><machine MACH="intrepid"DESC="ANL IBM BG/P, os is BGP, 4 pes/node, batch system is cobalt"EXEROOT="/intrepid-fs0/users/$USER/scratch/exe/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/gpfs/home/projects/ccsm/inputdata"DIN_LOC_ROOT_CLMQIAN="/gpfs/home/projects/ccsm/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/intrepid-fs0/users/$USER/persistent/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="/home/$USER/csm/$CASE/"CCSM_BASELINE="/gpfs/home/projects/ccsm/ccsm_baselines"CCSM_CPRNC="/gpfs/home/projects/ccsm/tools/cprnc/cprnc"OS="BGP"BATCHQUERY="qstat"BATCHSUBMIT="csh"GMAKE_J="2"MAX_TASKS_PER_NODE="4"MPISERIAL_SUPPORT="TRUE" /><machine MACH="jaguar"DESC="ORNL XT4, os is CNL, 4 pes/node, batch system is PBS"EXEROOT="/tmp/work/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/tmp/proj/ccsm/inputdata"DIN_LOC_ROOT_CLMQIAN="/tmp/proj/ccsm/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/tmp/work/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/tmp/proj/ccsm/ccsm_baselines"CCSM_CPRNC="/tmp/proj/ccsm/tools/ccsm_cprnc/cprnc"OS="CNL"BATCHQUERY="qstat -f"BATCHSUBMIT="qsub" GMAKE_J="4" MAX_TASKS_PER_NODE="4"MPISERIAL_SUPPORT="TRUE" /><machine MACH="jaguarpf"DESC="ORNL XT5, os is CNL, 12 pes/node, batch system is PBS"EXEROOT="/tmp/work/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/tmp/proj/ccsm/inputdata"DIN_LOC_ROOT_CLMQIAN="/tmp/proj/ccsm/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/tmp/work/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/tmp/proj/ccsm/ccsm_baselines"CCSM_CPRNC="/tmp/proj/ccsm/tools/ccsm_cprnc/cprnc"OS="CNL"BATCHQUERY="qstat -f"BATCHSUBMIT="qsub"GMAKE_J="4"MAX_TASKS_PER_NODE="12"MPISERIAL_SUPPORT="TRUE" /><machine MACH="chester"DESC="ORNL XT5, os is CNL, 12 pes/node, batch system is PBS, test system"EXEROOT="/lustre/scratch/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/lustre/scratch/$CCSMUSER/ccsm/inputdata"DIN_LOC_ROOT_CLMQIAN="/lustre/scratch/$CCSMUSER/ccsm/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/lustre/scratch/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/lustre/scratch/$CCSMUSER/ccsm_baselines"CCSM_CPRNC="/lustre/scratch/$CCSMUSER/tools/ccsm_cprnc/cprnc"OS="CNL"BATCHQUERY="qstat -f"BATCHSUBMIT="qsub"GMAKE_J="4"MAX_TASKS_PER_NODE="12"MPISERIAL_SUPPORT="TRUE" /><machine MACH="kraken"DESC="NICS/UT/teragrid XT5, os is CNL, 12 pes/node"EXEROOT="/lustre/scratch/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/lustre/scratch/proj/ccsm/inputdata"DIN_LOC_ROOT_CLMQIAN="/lustre/scratch/proj/ccsm/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/lustre/scratch/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/lustre/scratch/proj/ccsm/ccsm_baselines"CCSM_CPRNC="/lustre/scratch/proj/ccsm/tools/cprnc/cprnc"OS="CNL"BATCHQUERY="qstat -f"BATCHSUBMIT="qsub" GMAKE_J="12" MAX_TASKS_PER_NODE="12"MPISERIAL_SUPPORT="FALSE" /><machine MACH="lynx_pgi"DESC="NCAR XT5, os is CNL, 12 pes/node, batch system is PBS"EXEROOT="/ptmp/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/glade/proj3/cseg/inputdata"DIN_LOC_ROOT_CLMQIAN="/glade/proj2/cgd/tss/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/ptmp/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/glade/proj3/cseg/ccsm_baselines"CCSM_CPRNC="/ptmp/csm/tools/cprnc/cprnc"OS="CNL"BATCHQUERY="UNSET"BATCHSUBMIT="qsub"GMAKE_J="4"MAX_TASKS_PER_NODE="12"MPISERIAL_SUPPORT="TRUE" /><machine MACH="lynx_pathscale"DESC="NCAR XT5, os is CNL, 12 pes/node, batch system is PBS"EXEROOT="/ptmp/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include"DIN_LOC_ROOT_CSMDATA="/glade/proj3/cseg/inputdata"DIN_LOC_ROOT_CLMQIAN="/glade/proj2/cgd/tss/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/ptmp/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/glade/proj3/cseg/ccsm_baselines"CCSM_CPRNC="/ptmp/csm/tools/cprnc/cprnc"OS="CNL"BATCHQUERY="UNSET"BATCHSUBMIT="qsub"GMAKE_J="4"MAX_TASKS_PER_NODE="12"MPISERIAL_SUPPORT="TRUE" /><machine MACH="midnight"DESC="ARSC Sun Cluster, os is Linux (pgi), batch system is PBS"EXEROOT="$WORKDIR/$CASE"OBJROOT="$EXEROOT"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/wrkdir/maslowsk/RACM/inputdata"DIN_LOC_ROOT_CLMQIAN="/wrkdir/maslowsk/RACM/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="$WORKDIR/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/wrkdir/maslowsk/RACM/ccsm_baselines"CCSM_CPRNC="/wrkdir/maslowsk/RACM/tools/cprnc/cprnc"OS="Linux.pgi"BATCHQUERY="qstat"BATCHSUBMIT="qsub" GMAKE_J="1" MAX_TASKS_PER_NODE="16"MPISERIAL_SUPPORT="FALSE" /><machine MACH="pleiades"DESC="NASA/AMES Linux Cluster, Linux (ia64), Altix ICE, 3.0 GHz Harpertown processors, 8 pes/node and 8 GB of memory, batch system is PBS" EXEROOT="/nobackup/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/nobackup/$CCSMUSER/ccsmdata/inputdata"DIN_LOC_ROOT_CLMQIAN="/nobackup/$CCSMUSER/ccsmdata/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/nobackup/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux.ifort"BATCHQUERY="qstat"BATCHSUBMIT="qsub" GMAKE_J="4" MAX_TASKS_PER_NODE="8"MPISERIAL_SUPPORT="FALSE" /><machine MACH="pleiades_wes"DESC="NASA/AMES Linux Cluster, Linux (ia64), Altix ICE, 2.93 GHz Westmere processors, 12 pes/node and 24 GB of memory, batch system is PBS" EXEROOT="/nobackup/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/nobackup/$CCSMUSER/ccsmdata/inputdata"DIN_LOC_ROOT_CLMQIAN="/nobackup/$CCSMUSER/ccsmdata/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/nobackup/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="csm/$CASE"OS="Linux.ifort"BATCHQUERY="qstat"BATCHSUBMIT="qsub" GMAKE_J="4" MAX_TASKS_PER_NODE="12"MPISERIAL_SUPPORT="FALSE" /><machine MACH="prototype_atlas"DESC="LLNL Linux Cluster, Linux (pgi), 8 pes/node, batch system is Moab"EXEROOT="/p/lscratchd/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/p/lscratchd/mirin/ccsm3data/inputdata"DIN_LOC_ROOT_CLMQIAN="/p/lscratchd/mirin/ccsm3data/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/p/lscratchd/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="UNSET"CCSM_BASELINE="/p/lscratchd/$CCSMUSER/ccsm_baselines"CCSM_CPRNC="/p/lscratchd/mirin/ccsm3data/tools/cprnc/cprnc"OS="Linux.pgi" BATCHQUERY="mshow"BATCHSUBMIT="msub" GMAKE_J="8" MAX_TASKS_PER_NODE="8"MPISERIAL_SUPPORT="FALSE" /><machine MACH="prototype_hera"DESC="LLNL Linux Cluster, Linux (pgi), 16 pes/node, batch system is Moab"EXEROOT="/p/lscratchd/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/p/lscratchd/mirin/ccsm3data/inputdata"DIN_LOC_ROOT_CLMQIAN="/p/lscratchd/mirin/ccsm3data/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/p/lscratchd/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="UNSET"CCSM_BASELINE="/p/lscratchd/$CCSMUSER/ccsm_baselines"CCSM_CPRNC="/p/lscratchd/mirin/ccsm3data/tools/cprnc/cprnc"OS="Linux.pgi" BATCHQUERY="mshow"BATCHSUBMIT="msub" GMAKE_J="8" MAX_TASKS_PER_NODE="16"MPISERIAL_SUPPORT="FALSE" /><machine MACH="prototype_columbia"DESC="NASA Ames Linux Cluster, Linux (ia64), 2 pes/node, batch system is PBS" EXEROOT="/nobackup2b/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/nobackup2b/$CCSMUSER/ccsm3data/inputdata"DIN_LOC_ROOT_CLMQIAN="/nobackup2b/$CCSMUSER/ccsm3data/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="UNSET"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="UNSET"OS="Linux.ifort"BATCHQUERY="qstat"BATCHSUBMIT="qsub" GMAKE_J="1" MAX_TASKS_PER_NODE="2"MPISERIAL_SUPPORT="FALSE" /><machine MACH="prototype_frost"DESC="NCAR IBM BG/L, os is BGL, 8 pes/node, batch system is cobalt"EXEROOT="/ptmp/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/ptmp/dennis/inputdata"DIN_LOC_ROOT_CLMQIAN="/ptmp/dennis/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/ptmp/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="TRUE"DOUT_L_MSROOT="csm/$CASE"CCSM_BASELINE="/ptmp/dennis/ccsm_baselines"CCSM_CPRNC="/ptmp/dennis/tools/cprnc/cprnc"OS="BGL"BATCHQUERY="cqstat -f %jn"GMAKE_J="8" MAX_TASKS_PER_NODE="8"MPISERIAL_SUPPORT="FALSE" /><machine MACH="prototype_nyblue"DESC="SUNY IBM BG/L, os is BGL, 8 pes/node, batch system is cobalt"EXEROOT="/gpfs/scratch1/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/gpfs/home1/jdennis/inputdata"DIN_LOC_ROOT_CLMQIAN="/gpfs/home1/jdennis/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/gpfs/scratch1/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="UNSET"CCSM_BASELINE="/gpfs/home1/jdennis/ccsm_baselines"CCSM_CPRNC="/gpfs/home1/jdennis/tools/cprnc/cprnc"OS="BGL"BATCHQUERY="cqstat -f %jn"GMAKE_J="8" MAX_TASKS_PER_NODE="8"MPISERIAL_SUPPORT="FALSE" /><machine MACH="prototype_ranger"DESC="TACC Linux Cluster, Linux (pgi), 1 pes/node, batch system is SGE" EXEROOT="$WORK/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="$WORK/inputdata"DIN_LOC_ROOT_CLMQIAN="$WORK/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="$WORK/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="UNSET"OS="Linux.pgi" BATCHQUERY="qstat"BATCHSUBMIT="qsub" GMAKE_J="1" MAX_TASKS_PER_NODE="4"MPISERIAL_SUPPORT="FALSE" /><machine MACH="prototype_ubgl"DESC="LLNL IBM BG/L, os is BGL, 2 pes/node, batch system is Moab"EXEROOT="/p/lscratchc/$CCSMUSER/$CASE"OBJROOT="$EXEROOT"LIBROOT="$EXEROOT/lib"INCROOT="$EXEROOT/lib/include" DIN_LOC_ROOT_CSMDATA="/p/lscratchc/mirin/ccsm3data/inputdata"DIN_LOC_ROOT_CLMQIAN="/p/lscratchc/mirin/ccsm3data/inputdata/atm/datm7/atm_forcing.datm7.Qian.T62.c080727"DOUT_S_ROOT="/p/lscratchc/$CCSMUSER/archive/$CASE"DOUT_L_HTAR="FALSE"DOUT_L_MSROOT="UNSET"CCSM_BASELINE="/p/lscratchc/mirin/ccsm3data/ccsm_baselines"CCSM_CPRNC="/p/lscratchc/mirin/ccsm3data/tools/cprnc/cprnc"OS="BGL"BATCHQUERY="mshow"BATCHSUBMIT="msub" GMAKE_J="1" MAX_TASKS_PER_NODE="1"MPISERIAL_SUPPORT="FALSE" /><machine MACH="generic_ibm"DESC="generic ibm power system, os is AIX, batch system is LoadLeveler, user-defined"MPISERIAL_SUPPORT="TRUE"OS="AIX" /><machine MACH="generic_xt"DESC="generic CRAY XT, os is CNL, batch system is PBS, user-defined"MPISERIAL_SUPPORT="TRUE"OS="CNL" /><machine MACH="generic_linux_pgi"DESC="generic linux (pgi), os is Linux, batch system is PBS, user-defined"MPISERIAL_SUPPORT="TRUE"OS="Linux" /><machine MACH="generic_linux_lahey"DESC="generic linux (lahey), os is Linux, batch system is PBS, user-defined"MPISERIAL_SUPPORT="TRUE"OS="Linux" /><machine MACH="generic_linux_intel"DESC="generic linux (intel), os is Linux, batch system is PBS, user-defined"MPISERIAL_SUPPORT="TRUE"OS="Linux" /><machine MACH="generic_linux_pathscale"DESC="generic linux (pathscale), os is Linux, batch system is PBS, user-defined"MPISERIAL_SUPPORT="TRUE"OS="Linux" /><machine MACH="generic_darwin_intel"DESC="generic darwin (intel), os is Darwin (Macintosh OS X), no batch system, user-defined"GMAKE="make"MPISERIAL_SUPPORT="TRUE"OS="Darwin" /><machine MACH="generic_darwin_pgi"DESC="generic darwin (pgi), os is Darwin (Macintosh OS X), no batch system, user-defined"GMAKE="make"MPISERIAL_SUPPORT="TRUE"OS="Darwin" /></config_machines>這里面只需要將config_machine.xml 里面huanmy_intel 里面的可執行文件路徑改成自己想要放的地方就可以了。
到這里機器配置的任務完成了。
三、創建case和編譯
1.創建case
cd $CAS_ESM_HOME/scripts
?./create_newcase -case FAMIP_fd14 -compset FAMIPC5X -res fd14_fd14 -mach huanmy_intel
Successfully created the case for afw?
能夠正確建立case,說明前面的機器配置是正確的！
2.編譯case
cd??FAMIP_fd14!# 進入case的目錄里面
[chengxl@login01 FAMIP_fd14]$ ls
CaseStatus ? ? ? ?configure ? ? ? ? ? ? ? env_case.xml ? ? ?env_run.xml ?README ? ? ? Tools
check_case ? ? ? ?create_production_test ?env_conf.xml ? ? ?LockedFiles ?README.case ?xmlchange
check_input_data ?env_build.xml ? ? ? ? ? env_mach_pes.xml ?Macros.afw ? SourceMods
先要配置一下
[chengxl@login01 FAMIP_fd14]$ ./configure -case
Generating resolved namelist, prestage, and build scripts
configure done.
Successfully generated resolved namelist, prestage, and build scripts
Locking file env_conf.xml
Generating clean_build script?
Generating submit script?
Generating build script?
Generating run script?
env: /data/chengxl/cas-esm/scripts/casesm_utils/Machines/mkbatch.afw: No such file or directory
env: /data/chengxl/cas-esm/scripts/casesm_utils/Machines/mkbatch.afw: No such file or directory
env: /data/chengxl/cas-esm/scripts/casesm_utils/Machines/mkbatch.afw: No such file or directory
configure error: configure generate_batch error
./configure -case?
?./FAMIP_fd14.huanmy_intel.build?
[chengxl@login01 scripts]$ ./create_newcase -case FAMIP_fd14 -compset FAMIPC5X -res fd14_fd14 -mach huanmy_intel --------------------------------------------------------------------------------CAS-ESM2.1 READMEFor both a quick start as well as a detailed summary of creating and running a CAS-ESM model case, see the CAS-ESM2.1 User's Guide atIMPORTANT INFORMATION ABOUT SCIENTIFIC VALIDATIONCAS-ESM2.1 has the flexibility to configure cases with many different combinations of component models, grids, and model settings, but this version of CAS-ESM has only been validated scientifically for the following fully active configurations:1.9x2.5_gx1v6 B_1850_CN1.9x2.5_gx1v6 B_1850_RAMPCO2_CN1.9x2.5_gx1v6 B_1850-2000_CN1.9x2.5_gx1v6 B_1850_CAM5_CN0.9x1.25_gx1v6 B_1850_CAM5_CN0.9x1.25_gx1v6 B_1850-2000_CAM5_CN0.9x1.25_gx1v6 B_1850_CN0.9x1.25_gx1v6 B_1850_RAMPCO2_CN0.9x1.25_gx1v6 B_1850-2000_CN0.9x1.25_gx1v6 B_1850_BGC-BPRP0.9x1.25_gx1v6 B_1850_BGC-BDRD0.9x1.25_gx1v6 B_1850-2000_BGC-BPRP0.9x1.25_gx1v6 B_1850-2000_BGC-BDRD0.9x1.25_gx1v6 B_1850_CN_CHEM 0.9x1.25_gx1v6 B_1850-2000_CN_CHEM1.9x2.5_gx1v6 B_1850_WACCM_CN1.9x2.5_gx1v6 B_1850-2005_WACCM_CN1.9x2.5_gx1v6 B_1955-2005_WACCM_CN1.9x2.5_gx1v6 B_RCP2.6_WACCM_CN1.9x2.5_gx1v6 B_RCP4.5_WACCM_CN1.9x2.5_gx1v6 B_RCP8.5_WACCM_CNT31_gx3v7 B_1850_CNT31_gx3v7 B_1850-2000_CNIf the user is interested in running a "stand-alone" component configuration, the following model configurations have been validated scientifically and have associated diagnostic output as part of the release:1.9x2.5_1.9x2.5 F_2000_WACCM1.9x2.5_1.9x2.5 F_AMIP_CAM50.9x1.25_0.9x1.25 F_AMIP_CAM51.9x2.5_1.9x2.5 F_AMIP_CN0.9x1.25_0.9x1.25 F_AMIP_CN0.9x1.25_gx1v6 I_20000.9x1.25_gx1v6 I_2000_CNT62_gx1v6 C_NORMAL_YEARFor more information regarding alternative component configurations, please refer tocasesm_utils/Case.template/config_compsets.xml -------------------------------------------------------------------------------- *********************************************************** Component set : F_AMIP_CAM5X (FAMIPC5X) Desc : AMIP run for CMIP5 protocol with IAP5 ***********************************************************Creating /data/chengxl/cas-esm/scripts/FAMIP_fd14 Locking file /data/chengxl/cas-esm/scripts/FAMIP_fd14/env_case.xml Successfully created the case for huanmy_intel [chengxl@login01 scripts]$ cd FAMIP_fd14/ [chengxl@login01 FAMIP_fd14]$ ls CaseStatus configure env_case.xml env_mach_specific Macros.huanmy_intel SourceMods check_case create_production_test env_conf.xml env_run.xml README Tools check_input_data env_build.xml env_mach_pes.xml LockedFiles README.case xmlchange [chengxl@login01 FAMIP_fd14]$ ./configure -case Generating resolved namelist, prestage, and build scripts configure done. Successfully generated resolved namelist, prestage, and build scripts Locking file env_conf.xml Generating clean_build script Generating submit script Generating build script Generating run script Locking file env_mach_pes.xml Successfully configured the case for huanmy_intel If an old build exists for this case, you might want to run the *.clean_build script before building [chengxl@login01 FAMIP_fd14]$ ./FAMIP_fd14.huanmy_intel.build -------------------------------------------------------------------------CAS-ESM BUILDNML SCRIPT STARTING- To prestage restarts, untar a restart.tar file into /data/chengxl/cas-esm/FAMIP_fd14/runCAS-ESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY -------------------------------------------------------------------------CAS-ESM PRESTAGE SCRIPT STARTING- CAS-ESM input data directory, DIN_LOC_ROOT_CSMDATA, is /data/zhangh/data/inputdata- Case input data directory, DIN_LOC_ROOT, is /data/zhangh/data/inputdata- Checking the existence of input datasets in DIN_LOC_ROOTCAS-ESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY -------------------------------------------------------------------------CAS-ESM BUILDEXE SCRIPT STARTING- Build Libraries: mct pio csm_share Tue Feb 21 15:13:32 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/mct/mct.bldlog.230221-151320 Tue Feb 21 15:14:35 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/pio/pio.bldlog.230221-151320 Tue Feb 21 15:15:45 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/csm_share/csm_share.bldlog.230221-151320 Tue Feb 21 15:16:12 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/run/cpl.bldlog.230221-151320 Tue Feb 21 15:16:12 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/run/atm.bldlog.230221-151320 Tue Feb 21 15:20:13 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/run/wrf.bldlog.230221-151320 Tue Feb 21 15:20:13 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/run/gea.bldlog.230221-151320 Tue Feb 21 15:20:13 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/run/lnd.bldlog.230221-151320 Tue Feb 21 15:20:49 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/run/ice.bldlog.230221-151320 Tue Feb 21 15:21:18 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/run/ocn.bldlog.230221-151320 Tue Feb 21 15:21:20 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/run/glc.bldlog.230221-151320 Tue Feb 21 15:21:21 CST 2023 /data/chengxl/cas-esm/FAMIP_fd14/run/casesm.bldlog.230221-151320- Locking file env_build.xml- Locking file Macros.huanmy_intelCAS-ESM BUILDEXE SCRIPT HAS FINISHED SUCCESSFULLY可以看見我這里成功編譯
[chengxl@login01 FAMIP_fd14]$ ls
atm ? ? cpl ? ? ? ?FAMIP_fd14.casesm.exe ? ? ? ? ? ? ? ?gea ?ice ?lnd ?ocn ?run
casesm ?csm_share ?FAMIP_fd14.casesm.exe.230221-151320 ?glc ?lib ?mct ?pio ?wrf
到EXE_ROOT看見確實存在可執行文件了
到此創建和編譯case成功！
四、運行case
1.編寫作業腳本
進入exeroot/run?
mpi_run_casesm.job
#!/bin/sh
#SBATCH --job-name=iap_myb
#SBATCH -p normal
#SBATCH -N 10
#SBATCH -n 640
#SBATCH --ntasks-per-node=64
#SBATCH -o log.%j
#SBATCH -e log.%j
#SBATCH --time=10-08:00
mpirun -np 640? ./casesm.exe > log.casesm
2.拷貝陸面模式初始場和強迫場
（1）mkdir timing
同cesm
（2）陸面資料
cas-esm不知道為什么要自己手動設置陸面資料
cp /work/zhanghe/CAS-ESM2_tutorial/master/code/demo/AMIPrun/link.sh .
./link.sh
cas-esm 里面需要路面的強迫資料，我后來用了wuchenglai老師資料夾里面的資料。
?（3）修改一些in的 參數
cas-esm 中還需要修改點東西
atm_in中?
dtdy = 200.0D0
lnd_in中
co2_type?? = ‘diagnostic'
3.提交和查看作業腳本
sbatch mpi_run_casesm.job
squeue
tail -f log.casesm
總結
以上是生活随笔為你收集整理的cas-ESM 安装教程的全部內容，希望文章能夠幫你解決所遇到的問題。
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