必須條件：

1:安裝好JDK

2:安裝好R

步驟1： 運行R Shell

[jifeng@feng03 R-3.1.1]$ RR version 3.1.1 (2014-07-10) -- "Sock it to Me" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-unknown-linux-gnu (64-bit)R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details.Natural language support but running in an English localeR is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications.Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.>
步驟2： 安裝rJava

install.packages("rJava")

> install.packages("rJava") Warning in install.packages("rJava") :'lib = "/usr/local/lib64/R/library"' is not writable Would you like to use a personal library instead? (y/n) y Would you like to create a personal library ~/R/x86_64-unknown-linux-gnu-library/3.1 to install packages into? (y/n) y --- Please select a CRAN mirror for use in this session --- CRAN mirror 1: 0-Cloud [https] 2: 0-Cloud 3: Algeria 4: Argentina (La Plata) 5: Australia (Canberra) 6: Australia (Melbourne) 7: Austria [https] 8: Austria 9: Belgium (Antwerp) 10: Belgium (Ghent) 11: Brazil (BA) 12: Brazil (PR) 13: Brazil (RJ) 14: Brazil (SP 1) 15: Brazil (SP 2) 16: Canada (BC) 17: Canada (NS) 18: Canada (ON) 19: Chile [https] 20: Chile 21: China (Beijing 2) 22: China (Beijing 3) 23: China (Beijing 4) [https] 24: China (Beijing 4) 25: China (Hefei) [https] 26: China (Hefei) 27: China (Xiamen) 28: Colombia (Cali) [https] 29: Colombia (Cali) 30: Czech Republic 31: Denmark 32: Ecuador 33: El Salvador 34: Estonia 35: France (Lyon 1) 36: France (Lyon 2) [https] 37: France (Lyon 2) 38: France (Montpellier) 39: France (Paris 1) 40: France (Paris 2) 41: Germany (Berlin) 42: Germany (G?ttingen) 43: Germany (Münster) [https] 44: Germany (Münster) 45: Greece 46: Hungary 47: Iceland [https] 48: Iceland 49: India 50: Indonesia (Jakarta) 51: Iran 52: Ireland 53: Italy (Milano) 54: Italy (Padua) [https] 55: Italy (Padua) 56: Italy (Palermo) 57: Japan (Tokyo) 58: Japan (Yamagata) 59: Korea (Seoul 1) 60: Korea (Seoul 2) 61: Korea (Ulsan) 62: Lebanon 63: Mexico (Mexico City) 64: Mexico (Texcoco) 65: Netherlands (Amsterdam) 66: Netherlands (Utrecht) 67: New Zealand 68: Norway 69: Philippines 70: Poland 71: Portugal (Lisbon) 72: Portugal (Porto) 73: Russia (Moscow) [https] 74: Russia (Moscow) 75: Slovakia 76: South Africa (Cape Town) 77: South Africa (Johannesburg) 78: Spain (A Coru?a) [https] 79: Spain (A Coru?a) 80: Spain (Madrid) 81: Sweden 82: Switzerland [https] 83: Switzerland 84: Taiwan (Chungli) 85: Taiwan (Taipei) 86: Thailand 87: Turkey (Denizli) 88: Turkey (Mersin) 89: UK (Bristol) [https] 90: UK (Bristol) 91: UK (Cambridge) [https] 92: UK (Cambridge) 93: UK (London 1) 94: UK (London 2) 95: UK (St Andrews) 96: USA (CA 1) [https] 97: USA (CA 1) 98: USA (CA 2) 99: USA (CO) 100: USA (IA) 101: USA (IN) 102: USA (KS) [https] 103: USA (KS) 104: USA (MD) 105: USA (MI 1) [https] 106: USA (MI 1) 107: USA (MI 2) 108: USA (MO) 109: USA (NC) 110: USA (OH 1) 111: USA (OH 2) 112: USA (OR) 113: USA (PA 1) 114: USA (PA 2) 115: USA (TN) [https] 116: USA (TN) 117: USA (TX) [https] 118: USA (TX) 119: USA (WA) [https] 120: USA (WA) 121: Venezuela 122: Vietnam 選擇21

Selection: 21 trying URL 'http://mirror.bjtu.edu.cn/cran/src/contrib/rJava_0.9-7.tar.gz' Content type 'application/octet-stream' length 711181 bytes (694 Kb) opened URL ================================================== downloaded 694 Kb* installing *source* package ‘rJava’ ... ** package ‘rJava’ successfully unpacked and MD5 sums checked checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether gcc -std=gnu99 supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/home/jifeng/jdk1.7.0_79/jre/bin/java' archiver : '/home/jifeng/jdk1.7.0_79/bin/jar' compiler : '/home/jifeng/jdk1.7.0_79/bin/javac' header prep.: '/home/jifeng/jdk1.7.0_79/bin/javah' cpp flags : '-I/home/jifeng/jdk1.7.0_79/include -I/home/jifeng/jdk1.7.0_79/include/linux' java libs : '-L/home/jifeng/jdk1.7.0_79/jre/lib/amd64/server -ljvm' checking whether Java run-time works... yes checking whether -Xrs is supported... yes checking whether JNI programs can be compiled... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... yes checking whether debugging output should be enabled... no checking whether memory profiling is desired... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether headless init is enabled... no checking whether JRI is requested... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h === configuring in jri (/tmp/RtmpOBzOar/R.INSTALL5b041b635dec/rJava/jri) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for gcc... gcc -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking whether Java interpreter works... checking whether JNI programs can be compiled... yes checking whether JNI programs can be run... yes checking JNI data types... ok checking whether Rinterface.h exports R_CStackXXX variables... yes checking whether Rinterface.h exports R_SignalHandlers... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs/home/jifeng/jdk1.7.0_79/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java warning: [options] bootstrap class path not set in conjunction with -source 1.4 Note: examples/rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 1 warning make[1]: Leaving directory `/tmp/RtmpOBzOar/R.INSTALL5b041b635dec/rJava/jri' installing via 'install.libs.R' to /home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/rJava ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (rJava)The downloaded source packages are in‘/tmp/Rtmp1A16li/downloaded_packages’
步驟3: 在R shell中安裝devtools

install.packages("devtools")

> install.packages("devtools") Installing package into ‘/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1’ (as ‘lib’ is unspecified) also installing the dependencies ‘stringi’, ‘magrittr’, ‘BH’, ‘mime’, ‘R6’, ‘stringr’, ‘brew’, ‘Rcpp’, ‘xml2’, ‘httr’, ‘curl’, ‘memoise’, ‘whisker’, ‘evaluate’, ‘digest’, ‘rstudioapi’, ‘jsonlite’, ‘roxygen2’, ‘rversions’, ‘git2r’trying URL 'http://mirror.bjtu.edu.cn/cran/src/contrib/stringi_0.5-5.tar.gz' Content type 'application/octet-stream' length 3639183 bytes (3.5 Mb) opened URL ================================================== downloaded 3.5 Mbtrying URL 'http://mirror.bjtu.edu.cn/cran/src/contrib/magrittr_1.5.tar.gz' Content type 'application/octet-stream' length 200504 bytes (195 Kb) opened URL ================================================== downloaded 195 Kb出現錯誤：

------------------------- ANTICONF ERROR --------------------------- Configuration failed because libcurl was not found. Try installing:* deb: libcurl4-openssl-dev (Debian, Ubuntu, etc)* rpm: libcurl-devel (Fedora, CentOS, RHEL)* csw: libcurl_dev (Solaris) If libcurl is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' -------------------------------------------------------------------- ERROR: configuration failed for package ‘curl’ * removing ‘/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/curl’ * installing *source* package ‘whisker’ ... ** package ‘whisker’ successfully unpacked and MD5 sums checked ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (whisker) * installing *source* package ‘digest’ ... ** package ‘digest’ successfully unpacked and MD5 sums checked ** libs
configure: error: in `/tmp/RtmpkQMD9t/R.INSTALL6c1166a0db0e/git2r': configure: error: ---------------------------------------------OpenSSL library requiredPlease install:libssl-dev (deb) or openssl-devel (rpm)--------------------------------------------- See `config.log' for more details ERROR: configuration failed for package ‘git2r’ * removing ‘/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/git2r’ * installing *source* package ‘stringr’ ... ** package ‘stringr’ successfully unpacked and MD5 sums checked ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (stringr) * installing *source* package ‘xml2’ ... ** package ‘xml2’ successfully unpacked and MD5 sums checked Package libxml-2.0 was not found in the pkg-config search path. Perhaps you should add the directory containing `libxml-2.0.pc' to the PKG_CONFIG_PATH environment variable No package 'libxml-2.0' found Package libxml-2.0 was not found in the pkg-config search path. Perhaps you should add the directory containing `libxml-2.0.pc' to the PKG_CONFIG_PATH environment variable No package 'libxml-2.0' found Using PKG_CFLAGS= Using PKG_LIBS=-lxml2 ------------------------- ANTICONF ERROR --------------------------- Configuration failed because libxml-2.0 was not found. Try installing:* deb: libxml2-dev (Debian, Ubuntu, etc)* rpm: libxml2-devel (Fedora, CentOS, RHEL)* csw: libxml2_dev (Solaris) If libxml-2.0 is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a libxml-2.0.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' -------------------------------------------------------------------- ERROR: configuration failed for package ‘xml2’ * removing ‘/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/xml2’ * installing *source* package ‘memoise’ ... ** package ‘memoise’ successfully unpacked and MD5 sums checked ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (memoise) ERROR: dependency ‘curl’ is not available for package ‘httr’ * removing ‘/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/httr’ * installing *source* package ‘evaluate’ ... ** package ‘evaluate’ successfully unpacked and MD5 sums checked ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (evaluate) * installing *source* package ‘roxygen2’ ... ** package ‘roxygen2’ successfully unpacked and MD5 sums checked ** libs g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/Rcpp/include" -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/Rcpp/include" -fpic -g -O2 -c isComplete.cpp -o isComplete.o g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/Rcpp/include" -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/Rcpp/include" -fpic -g -O2 -c parser.cpp -o parser.o g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/Rcpp/include" -fpic -g -O2 -c wrapString.cpp -o wrapString.o g++ -shared -L/usr/local/lib64 -o roxygen2.so RcppExports.o isComplete.o leadingSpaces.o parser.o wrapString.o -L/usr/local/lib64/R/lib -lR installing to /home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/roxygen2/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (roxygen2) ERROR: dependencies ‘curl’, ‘xml2’ are not available for package ‘rversions’ * removing ‘/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/rversions’ ERROR: dependencies ‘httr’, ‘curl’, ‘rversions’, ‘git2r’ are not available for package ‘devtools’ * removing ‘/home/jifeng/R/x86_64-unknown-linux-gnu-library/3.1/devtools’The downloaded source packages are in‘/tmp/Rtmp1A16li/downloaded_packages’ Warning messages: 1: In install.packages("devtools") :installation of package ‘curl’ had non-zero exit status 2: In install.packages("devtools") :installation of package ‘git2r’ had non-zero exit status 3: In install.packages("devtools") :installation of package ‘xml2’ had non-zero exit status 4: In install.packages("devtools") :installation of package ‘httr’ had non-zero exit status 5: In install.packages("devtools") :installation of package ‘rversions’ had non-zero exit status 6: In install.packages("devtools") :installation of package ‘devtools’ had non-zero exit status
根據錯誤安裝，我這里安裝了

[root@feng03 ~]# yum install libcurl-devel [root@feng03 ~]# yum install openssl-devel [root@feng03 ~]# yum install libxml2-devel

進入R shell

>install.packages("git2r")

>install.packages("xml2")

>install.packages("rversions")

步驟4: 安裝好rJava及devtools，接下來安裝SparkR

library(devtools) install_github("amplab-extras/SparkR-pkg", subdir="pkg")

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